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422D

5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]290
Detector technologyIMAGE PLATE
Spacegroup nameC 1 2 1
Unit cell lengths71.340, 39.980, 32.470
Unit cell angles90.00, 104.70, 90.00
Refinement procedure
Resolution10.000 - 2.600
Rwork0.188
R-free0.22800

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)OCTAMER SEGMENT FROM 14-MER AUAUAUAUAUAUAU
RMSD bond length0.010
RMSD bond angle1.200

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]10.0002.760
High resolution limit [Å]2.6002.600
Rmerge0.045
Number of reflections2494
<I/σ(I)>2.1
Completeness [%]91.071
Redundancy2.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5

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293pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11drop0.2 (M)
21dropmagnesium acetate0.1 (M)
31dropspermine0.6 (mM)
41dropsodium cacodylate0.05 (M)pH6.5
51dropPEG800010 (%)
61reservoirPEG40020 (%)

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PDB entries from 2024-12-25

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