422D
5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 290 |
Detector technology | IMAGE PLATE |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 71.340, 39.980, 32.470 |
Unit cell angles | 90.00, 104.70, 90.00 |
Refinement procedure
Resolution | 10.000 - 2.600 |
Rwork | 0.188 |
R-free | 0.22800 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | OCTAMER SEGMENT FROM 14-MER AUAUAUAUAUAUAU |
RMSD bond length | 0.010 |
RMSD bond angle | 1.200 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 10.000 | 2.760 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.045 | |
Number of reflections | 2494 | |
<I/σ(I)> | 2.1 | |
Completeness [%] | 91.0 | 71 |
Redundancy | 2.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 * | 293 | pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | 0.2 (M) | ||
2 | 1 | drop | magnesium acetate | 0.1 (M) | |
3 | 1 | drop | spermine | 0.6 (mM) | |
4 | 1 | drop | sodium cacodylate | 0.05 (M) | pH6.5 |
5 | 1 | drop | PEG8000 | 10 (%) | |
6 | 1 | reservoir | PEG400 | 20 (%) |