3ZRH
Crystal structure of the Lys29, Lys33-linkage-specific TRABID OTU deubiquitinase domain reveals an Ankyrin-repeat ubiquitin binding domain (AnkUBD)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-29 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.400, 72.150, 133.010 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.712 - 2.230 |
R-factor | 0.2035 |
Rwork | 0.200 |
R-free | 0.24780 |
Structure solution method | SIRAS |
Starting model (for MR) | NONE |
RMSD bond length | 0.013 |
RMSD bond angle | 1.413 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | SHARP |
Refinement software | PHENIX ((PHENIX.REFINE: DEV_764)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.320 | 2.350 |
High resolution limit [Å] | 2.230 | 2.230 |
Rmerge | 0.080 | 0.490 |
Number of reflections | 29095 | |
<I/σ(I)> | 12.1 | 2.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 4.1 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 5.9 | 150 MM NACL, 100 MM NAOAC, 5 MM MGCL2, 50 MM MES [PH 5.9] |