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3ZN5

VP16, a capsid protein of bacteriophage P23-77 (VP16-virus-derived)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2012-01-28
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 21
Unit cell lengths41.410, 77.050, 403.000
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.160 - 2.360
R-factor0.1946
Rwork0.193
R-free0.23440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB CODE 3ZMO
RMSD bond length0.010
RMSD bond angle1.070
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwareBUSTER (2.11.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.1602.420
High resolution limit [Å]2.3602.360
Rmerge0.1101.140
Number of reflections54151
<I/σ(I)>7.51.3
Completeness [%]99.199.6
Redundancy3.23.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROPSITTING DROP VAPOUR DIFFUSION SYSTEM, MICROLITER DROPS OF PURIFIED P23-77 VIRION (PROTEIN CONCENTRATION 2.4 MG/ML, SAMPLE BUFFER 20 MM TRIS-HCL PH 7.5, 5 MM MGCL2 AND 150 MM NACL) MIXED 1:1 WITH SOLUTION CONSISTING OF 0.1 M CITRIC ACID PH 3.5, 20 MM TRIS-HCL PH 7.5, 5 MM MGCL2, 150 MM NACL AND 25%(W/V) PEG 3350.

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PDB entries from 2024-08-07

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