3ZHD
The crystal structure of single domain antibody 8-4 scaffold.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 95 |
Collection date | 2012-07-06 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 87.079, 87.079, 55.738 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.312 - 1.962 |
R-factor | 0.1806 |
Rwork | 0.178 |
R-free | 0.23110 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.266 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.990 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.110 | 0.420 |
Number of reflections | 17772 | |
<I/σ(I)> | 48.4 | 10.8 |
Completeness [%] | 99.3 | 86.7 |
Redundancy | 21.8 | 17.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 4.6 | 27% PEG4000, 0.1M SODIUM ACETATE, PH4.6, 0.2M AMMONIUM SULFATE |