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3ZDY

Integrin alphaIIB beta3 headpiece and RGD peptide complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23ID
Synchrotron siteAPS
Beamline23ID
Temperature [K]100
Detector technologyCCD
DetectorMARRESEARCH
Spacegroup nameP 21 21 2
Unit cell lengths257.760, 145.250, 106.060
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.150 - 2.450
R-factor0.1823
Rwork0.182
R-free0.21560
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3t3p
RMSD bond length0.005
RMSD bond angle0.570
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.510
High resolution limit [Å]2.4502.450
Rmerge0.2001.390
Number of reflections146427
<I/σ(I)>71.6
Completeness [%]99.999.5
Redundancy6.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
18.911% PEG 8000, 0.2 M AMMONIUM SULFATE, 0.1 M TRIS-HCL, PH 8.9

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PDB entries from 2025-06-18

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