3X1E
Structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans without chloride
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-17 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.90000 |
Spacegroup name | H 3 |
Unit cell lengths | 114.880, 114.880, 84.233 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.340 - 1.250 |
R-factor | 0.14216 |
Rwork | 0.141 |
R-free | 0.17072 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3WKO |
RMSD bond length | 0.021 |
RMSD bond angle | 2.112 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.290 |
High resolution limit [Å] | 1.250 | 1.250 |
Number of reflections | 114829 | |
<I/σ(I)> | 16.5 | 3.6 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 7.5 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 293 | 0.1 M acetate buffer, 5.0%(w/v) PEG 4000, 75 mM CuSO4, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |