3X0V
Structure of L-lysine oxidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-04-19 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 116.975, 170.012, 81.046 |
Unit cell angles | 90.00, 132.01, 90.00 |
Refinement procedure
Resolution | 32.023 - 1.900 |
R-factor | 0.1603 |
Rwork | 0.159 |
R-free | 0.18820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3kve |
RMSD bond length | 0.007 |
RMSD bond angle | 1.243 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.7.1_743)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.400 | 2.000 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.106 | 0.362 |
Number of reflections | 92177 | |
<I/σ(I)> | 8.1 | 3.4 |
Completeness [%] | 99.9 | 100 |
Redundancy | 3 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 293 | 2% (w/v) PEG 400, 0.1M HEPES pH7.6, 1.8M Ammonium Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K |