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3VV8

Crystal structure of beta secetase in complex with 2-amino-3-methyl-6-((1S,2R)-2-(3'-methylbiphenyl-4-yl)cyclopropyl)pyrimidin-4(3H)-one

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU RAXIS IV++
Spacegroup nameP 61 2 2
Unit cell lengths101.920, 101.920, 169.260
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 2.500
R-factor0.2272
Rwork0.224
R-free0.28660
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.381
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.15)
Phasing softwareMOLREP
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]88.26533.3612.640
High resolution limit [Å]2.5007.9102.500
Rmerge0.0340.466
Rmeas0.0480.572
Rpim0.0300.244
Total number of observations127112660
Number of reflections17437
<I/σ(I)>8.114.42.6
Completeness [%]94.887.893.7
Redundancy4.12.35.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5120mM sodium citrate, 200mM ammonium iodide, 30%(w/v) polyethylene glycol 5000 monomethyl ether, pH 6.5, VAPOR DIFFUSION, SITTING DROP

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PDB entries from 2024-06-26

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