3VKZ
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at atmospheric pressure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Collection date | 2010-11-25 |
Detector | RIGAKU RAXIS VII |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 104.797, 59.003, 76.754 |
Unit cell angles | 90.00, 119.07, 90.00 |
Refinement procedure
Resolution | 22.150 - 1.840 |
R-factor | 0.1442 |
Rwork | 0.142 |
R-free | 0.18490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1a05 |
RMSD bond length | 0.029 |
RMSD bond angle | 2.207 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.870 |
High resolution limit [Å] | 1.840 | 4.990 | 1.840 |
Rmerge | 0.066 | 0.049 | 0.408 |
Number of reflections | 31951 | ||
<I/σ(I)> | 21.7 | ||
Completeness [%] | 89.4 | 78.3 | 89.3 |
Redundancy | 3.8 | 3.9 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | PEG 3350, calcium chloride, HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |