Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3V1B

Crystal structure of de novo designed MID1-apo2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyCCD
Collection date2010-11-11
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.9794
Spacegroup nameP 21 21 21
Unit cell lengths25.405, 41.931, 67.159
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution21.700 - 1.280
R-factor0.1644
Rwork0.162
R-free0.20270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1yzm
RMSD bond length0.016
RMSD bond angle1.535
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.7.3_927))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]21.7001.290
High resolution limit [Å]1.2801.280
Rmerge0.0670.507
Number of reflections19067
<I/σ(I)>38.82.5
Completeness [%]99.898.7
Redundancy8.28.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62930.1 microliters protein (20 mg/ml, 100 mM ammonium acetate buffer) mixed with 0.1-0.2 microliters crystallization buffer (0.1 M MES, pH 6.0, 30% PEG 600, 5% PEG 1000, 10% glycerol), VAPOR DIFFUSION, SITTING DROP, temperature 293K

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon