3V1B
Crystal structure of de novo designed MID1-apo2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-11-11 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9794 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 25.405, 41.931, 67.159 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.700 - 1.280 |
R-factor | 0.1644 |
Rwork | 0.162 |
R-free | 0.20270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yzm |
RMSD bond length | 0.016 |
RMSD bond angle | 1.535 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_927)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 21.700 | 1.290 |
High resolution limit [Å] | 1.280 | 1.280 |
Rmerge | 0.067 | 0.507 |
Number of reflections | 19067 | |
<I/σ(I)> | 38.8 | 2.5 |
Completeness [%] | 99.8 | 98.7 |
Redundancy | 8.2 | 8.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.1 microliters protein (20 mg/ml, 100 mM ammonium acetate buffer) mixed with 0.1-0.2 microliters crystallization buffer (0.1 M MES, pH 6.0, 30% PEG 600, 5% PEG 1000, 10% glycerol), VAPOR DIFFUSION, SITTING DROP, temperature 293K |