3UM4
X-ray Diffraction Studies of Ring Crystals obtained for d(CACGCG).d(CGCGTG): Stage (i) Hexagonal plates
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2009-10-01 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.54 |
Spacegroup name | P 32 |
Unit cell lengths | 17.693, 17.693, 42.495 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 15.320 - 2.820 |
R-factor | 0.24171 |
Rwork | 0.241 |
R-free | 0.26195 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Z-type DNA tetranucleotide built using InsightII |
RMSD bond length | 0.016 |
RMSD bond angle | 2.391 |
Data reduction software | AUTOMAR |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.910 |
High resolution limit [Å] | 2.810 | 2.810 |
Rmerge | 0.066 | 0.349 |
Number of reflections | 343 | |
<I/σ(I)> | 7.5 | 1.4 |
Completeness [%] | 93.0 | 93.9 |
Redundancy | 3.22 | 2.93 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 1mM DNA, 75mM sodium cacodylate trihydrate buffer (pH 7.0), 0.5mM cobalt hexammine chloride, 0.75mM spermine, equilibrated against 50% methyl pentane diol (MPD), VAPOR DIFFUSION, HANGING DROP, temperature 293K |