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3UBI

The Absence of Tertiary Interactions in a Self-Assembled DNA Crystal Structure

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]190
Detector technologyCCD
DetectorADSC QUANTUM 315r
Wavelength(s)1.1
Spacegroup nameH 3
Unit cell lengths169.980, 169.980, 88.638
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.069 - 6.805
R-factor0.1401
Rwork0.139
R-free0.15200
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.814
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((phenix.refine: dev_873))
Data quality characteristics
 Overall
Low resolution limit [Å]49.069
High resolution limit [Å]6.805
Number of reflections1413
Completeness [%]100.0
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293CRYSTALLIZATION CONDITIONS: GROWN BY VAPOR DIFFUSION WHILE TREATED WITH A CONTROLLED TEMPERATURE GRADIENT FROM 333 DEGS TO 293 DEGS., PH 8.5, VAPOR DIFFUSION, SITTING DROP

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PDB entries from 2025-07-16

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