3TR2
Structure of a orotidine 5'-phosphate decarboxylase (pyrF) from Coxiella burnetii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-08-12 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.620, 99.676, 110.565 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 17.896 - 2.001 |
R-factor | 0.1845 |
Rwork | 0.183 |
R-free | 0.21700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1LDV |
RMSD bond length | 0.006 |
RMSD bond angle | 0.995 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.7_650) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.420 | 2.000 |
Rmerge | 0.056 | 0.030 | 0.426 |
Number of reflections | 30584 | ||
<I/σ(I)> | 10.9 | ||
Completeness [%] | 98.2 | 94.2 | 94.5 |
Redundancy | 4.1 | 4.2 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | SITTING DROP | 8.5 | 277 | 0.09 M Tris, pH 8.5, 0.17 M sodium acetate, 25.5% PEG4000, 15% glycerol, SITTING DROP, temperature 277K |