3TFU
Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, post-reaction complex with a 3,6-dihydropyrid-2-one heterocycle inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-07-27 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.616, 66.312, 201.279 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.220 - 1.940 |
R-factor | 0.1824 |
Rwork | 0.181 |
R-free | 0.21410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tft |
RMSD bond length | 0.003 |
RMSD bond angle | 0.836 |
Data reduction software | d*TREK (9.9.8.0W9R) |
Data scaling software | d*TREK (9.9.8.0W9R) |
Phasing software | PHASER (2.1.4) |
Refinement software | PHENIX (1.7.1_743) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.220 | 39.220 | 2.000 |
High resolution limit [Å] | 1.940 | 4.170 | 1.940 |
Rmerge | 0.070 | 0.056 | 0.168 |
Total number of observations | 36111 | 40354 | |
Number of reflections | 62293 | ||
<I/σ(I)> | 17.6 | 36 | 7.8 |
Completeness [%] | 98.2 | 85.7 | 99.5 |
Redundancy | 6.66 | 6.08 | 6.49 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | Protein: 25 mM HEPES pH 7.5, 50 mM NaCl, 0.1 mM TCEP Reservoir:9% PEG 8000, 0.1M magnesium chloride, 0.1M HEPES pH 7.5 Cryo: 15% PEG 400 in reservoir solution , VAPOR DIFFUSION, HANGING DROP, temperature 293K |