3RU6
1.8 Angstrom resolution crystal structure of orotidine 5'-phosphate decarboxylase (pyrF) from Campylobacter jejuni subsp. jejuni NCTC 11168
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-04-21 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.598, 108.308, 97.707 |
Unit cell angles | 90.00, 95.73, 90.00 |
Refinement procedure
Resolution | 29.120 - 1.800 |
R-factor | 0.17005 |
Rwork | 0.168 |
R-free | 0.20267 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | balbes |
RMSD bond length | 0.011 |
RMSD bond angle | 1.503 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | BALBES |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.050 | 0.564 |
Number of reflections | 84340 | |
<I/σ(I)> | 18.41 | 1.86 |
Completeness [%] | 98.4 | 97.5 |
Redundancy | 2.6 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 295 | Protein: 7.3 mg/mL in 10 mM Tris/HCl pH 8.3, 0.25 M NaCl, 5 mM BME. Crystallization condition: The PACT suite (F3 (63): 0.2 M Sodium iodide, 0.1 M Bis Tris propane pH 6.5, 20 % w/v PEG3350). Mixed 1:1 v/v , VAPOR DIFFUSION, SITTING DROP, temperature 295K |