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3Q0D

Crystal structure of SUVH5 SRA- hemi methylated CG DNA complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 315
Wavelength(s)0.97918
Spacegroup nameP 42
Unit cell lengths76.379, 76.379, 74.254
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.095 - 2.370
R-factor0.2265
Rwork0.225
R-free0.26280
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)SRA Molecule from the SUVH5 SRA-fully methylated Cg DNA crystallized in space group P42212
RMSD bond length0.009
RMSD bond angle1.378
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP (MR)
Refinement softwarePHENIX ((phenix.refine))
Data quality characteristics
 Overall
Low resolution limit [Å]20.000
High resolution limit [Å]2.370
Rmerge0.070
Number of reflections17234
<I/σ(I)>30.1
Completeness [%]98.8
Redundancy7.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529119% PEG4000, 100 mM MES, pH 6.5, 200 mM NaCl and 3 mM spermine, VAPOR DIFFUSION, SITTING DROP, temperature 291K

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PDB entries from 2024-10-30

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