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3PVA

PENICILLIN V ACYLASE FROM B. SPHAERICUS

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]120
Spacegroup nameP 1
Unit cell lengths47.400, 129.600, 156.700
Unit cell angles88.30, 83.40, 84.60
Refinement procedure
Resolution14.000 - 2.800
R-factor0.211

*

Rwork0.211
R-free0.24300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)REFINED STRUCTURE FROM HEXAGONAL FORM
RMSD bond length0.020
RMSD bond angle0.040
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC
Data quality characteristics
 Overall
Low resolution limit [Å]18.000
High resolution limit [Å]2.800
Rmerge0.053
Total number of observations111412

*

Number of reflections77056
<I/σ(I)>11.2
Completeness [%]85.0
Redundancy2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

6.45MM DTT, 30% AS, 1% SUCROSE, 0.2M NA PHOSPHATE, PH 6.4
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirsodium phosphate0.1 (M)pH6.4
21reservoirdithiothreitol3 (mM)
31reservoirammonium sulfate
41reservoirsucrose solution0.9 (%(w/v))
51dropprotain15 (mg/ml)
61dropsodium phosphate0.2 (M)

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PDB entries from 2024-10-30

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