3PNW
Crystal Structure of the tudor domain of human TDRD3 in complex with an anti-TDRD3 FAB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-08-18 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97924 |
Spacegroup name | P 1 |
Unit cell lengths | 76.708, 93.726, 159.932 |
Unit cell angles | 80.96, 82.82, 90.06 |
Refinement procedure
Resolution | 30.000 - 2.050 |
R-factor | 0.224 |
Rwork | 0.223 |
R-free | 0.26350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdb entries 2HFF (modified on FFAS03 server) and 3PMT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.267 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.120 |
High resolution limit [Å] | 2.050 | 4.420 | 2.050 |
Rmerge | 0.086 | 0.044 | 0.414 |
Number of reflections | 266201 | ||
<I/σ(I)> | 6.4 | ||
Completeness [%] | 97.4 | 99 | 93.1 |
Redundancy | 2.5 | 2.6 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 16% PEG-3350, 0.05M citric acid, 0.05M bis-tris propane, vapor diffusion, sitting drop, temperature 293K |