3PL2
Crystal structure of a 5-keto-2-deoxygluconokinase (NCgl0155, Cgl0158) from Corynebacterium glutamicum ATCC 13032 KITASATO at 1.89 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-10-11 |
Detector | MARMOSAIC 300 mm CCD |
Spacegroup name | P 1 |
Unit cell lengths | 45.908, 79.494, 81.703 |
Unit cell angles | 101.86, 95.72, 92.11 |
Refinement procedure
Resolution | 37.804 - 1.890 |
R-factor | 0.1828 |
Rwork | 0.180 |
R-free | 0.22520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qcv |
RMSD bond length | 0.016 |
RMSD bond angle | 1.574 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0110) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.804 | 37.804 | 1.940 |
High resolution limit [Å] | 1.890 | 8.450 | 1.890 |
Rmerge | 0.060 | 0.438 | |
Total number of observations | 3868 | 12613 | |
Number of reflections | 87262 | ||
<I/σ(I)> | 7.8 | 8.2 | 1.2 |
Completeness [%] | 97.1 | 97.9 | 95.8 |
Redundancy | 2.3 | 3.9 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | 0.200M NH4OAc, 30.00% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K |