Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3PEB

The Structure of a Creatine_N Superfamily domain of a dipeptidase from Streptococcus thermophilus.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2010-06-14
DetectorADSC QUANTUM 210r
Wavelength(s)0.97937
Spacegroup nameP 61 2 2
Unit cell lengths70.503, 70.503, 160.388
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.430 - 1.860
R-factor0.1713
Rwork0.170
R-free0.19040
Structure solution methodSAD
RMSD bond length0.014
RMSD bond angle1.395
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMLPHARE
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.880
High resolution limit [Å]1.8505.0201.850
Rmerge0.0740.0660.782
Number of reflections20449
<I/σ(I)>9.9
Completeness [%]99.498.894.6
Redundancy23.822.115.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9.52970.1M CHES pH 9.5, 1.0M Sodium Citrate, VAPOR DIFFUSION, SITTING DROP, temperature 297K

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon