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3PD2

Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with seryl-3'-aminoadenosine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RUH3R
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2009-06-25
DetectorMAR scanner 345 mm plate
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths37.227, 66.334, 93.177
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution23.850 - 1.860
R-factor0.195
Rwork0.195
R-free0.22100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1y2q
RMSD bond length0.005
RMSD bond angle1.400
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0001.930
High resolution limit [Å]1.8601.860
Rmerge0.0550.151
Number of reflections20015
<I/σ(I)>32.39.1
Completeness [%]99.595.1
Redundancy5.85.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5298PEG 3350, Bis-Tris, NaCl, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

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