3P6K
Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 2.07 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-07-22 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91162,0.97920,0.97903 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 83.979, 83.979, 176.391 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.399 - 2.070 |
R-factor | 0.1797 |
Rwork | 0.178 |
R-free | 0.20790 |
Structure solution method | MAD |
RMSD bond length | 0.016 |
RMSD bond angle | 1.794 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.5.0110) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.399 | 29.399 | 2.140 |
High resolution limit [Å] | 2.070 | 4.440 | 2.070 |
Rmerge | 0.052 | 0.018 | 0.514 |
Number of reflections | 44694 | 8500 | 7951 |
<I/σ(I)> | 15.2 | 48.9 | 2 |
Completeness [%] | 99.1 | 98.7 | 98.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.20M lithium sulfate 2.00M ammonium sulfate, Additive: 0.001M pyridoxal 5'-phosphate (PLP), NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K |