3P16
Crystal structure of DNA polymerase III sliding clamp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-01-26 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9790 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 88.050, 132.974, 113.777 |
Unit cell angles | 90.00, 109.05, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.890 |
R-factor | 0.26124 |
Rwork | 0.260 |
R-free | 0.28655 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2pol |
RMSD bond length | 0.010 |
RMSD bond angle | 1.373 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.890 | 6.240 | 2.900 |
Rmerge | 0.024 | 0.535 | |
Number of reflections | 55132 | ||
<I/σ(I)> | 33.7 | 2.1 | |
Completeness [%] | 98.2 | 97 | 98.7 |
Redundancy | 2.8 | 2.8 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 289 | 15%(v/v) PEG 3350, 200mM MgCl2, and 100mM Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K |