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3ONR

Crystal structure of the calcium chelating immunodominant antigen, calcium dodecin (Rv0379),from Mycobacterium tuberculosis with a novel calcium-binding site

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Temperature [K]100
Detector technologyCCD
Wavelength(s)1.071, 1.072, 1.100
Spacegroup nameP 21 21 21
Unit cell lengths70.193, 78.446, 152.489
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.880 - 1.800
R-factor0.1835
Rwork0.181
R-free0.22930
Structure solution methodMAD
RMSD bond length0.025
RMSD bond angle2.062
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareSHARP
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 Overall
Low resolution limit [Å]76.700
High resolution limit [Å]1.800
Number of reflections78271
<I/σ(I)>20.8
Redundancy1.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1vapor diffusion,hanging and sitting drops82911M Sodium Formate, 10mM CaCl2, pH 8.0, vapor diffusion,hanging and sitting drops, temperature 291K
1vapor diffusion,hanging and sitting drops82911M Sodium Formate, 10mM CaCl2, pH 8.0, vapor diffusion,hanging and sitting drops, temperature 291K
1vapor diffusion,hanging and sitting drops82911M Sodium Formate, 10mM CaCl2, pH 8.0, vapor diffusion,hanging and sitting drops, temperature 291K
1vapor diffusion,hanging and sitting drops82911M Sodium Formate, 10mM CaCl2, pH 8.0, vapor diffusion,hanging and sitting drops, temperature 291K

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PDB entries from 2025-07-02

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