3ON5
Crystal structure of a xanthine dehydrogenase (BH1974) from Bacillus halodurans at 2.80 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-06-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.978954,0.918370 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 94.244, 94.244, 245.536 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 94.244 - 2.800 |
R-factor | 0.1961 |
Rwork | 0.195 |
R-free | 0.22180 |
Structure solution method | MAD + MOLECULAR REPLACEMENT |
Starting model (for MR) | 2we8 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.120 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | Rosetta |
Refinement software | BUSTER-TNT (BUSTER 2.8.0) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 94.244 | 94.244 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rmerge | 0.011 | 0.011 | |
Total number of observations | 6406 | 25727 | |
Number of reflections | 28218 | ||
<I/σ(I)> | 12.6 | 20.9 | 0.7 |
Completeness [%] | 99.9 | 99.6 | 99.9 |
Redundancy | 6.5 | 6.1 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 5.0% PEG-6000, 1.1M LiCl, 0.1M Citrate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K |