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3O7V

Crystal Structure of human Hiwi1 (V361M) PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 315
Wavelength(s)0.9792
Spacegroup nameP 41 2 2
Unit cell lengths44.460, 44.460, 147.197
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution15.000 - 2.100
R-factor0.2372
Rwork0.235
R-free0.27940
Structure solution methodSAD
RMSD bond length0.010
RMSD bond angle1.383
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.00020.0002.170
High resolution limit [Å]2.1004.5102.100
Rmerge0.0590.0410.180
Number of reflections9244
<I/σ(I)>38.415
Completeness [%]99.494.8100
Redundancy11.49.612
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.62771-5% PEG3350, 50 mM NaCl, 50 mM Na-acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-10-16

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