3O69
Structure of the E100A E.coli GDP-mannose hydrolase (yffh) in complex with Mg++
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E DW |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-08-18 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.379, 69.260, 98.554 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.810 - 2.100 |
R-factor | 0.2084 |
Rwork | 0.205 |
R-free | 0.27960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3o52 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.262 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 22.810 | 50.000 | 2.180 |
High resolution limit [Å] | 2.100 | 4.520 | 2.100 |
Rmerge | 0.089 | 0.049 | 0.331 |
Number of reflections | 23871 | ||
<I/σ(I)> | 12.8 | ||
Completeness [%] | 96.0 | 98.4 | 75.1 |
Redundancy | 5.6 | 5.8 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 20-26% PEG 3350, 0.2 M Mg Cl, 0.1 M Tris HCL pH 8.5, 4mM GDP-mannose at a ratio of 1:1 protein:reservoir, vapor diffusion, hanging drop, temperature 291K |