3NXW
Crystal structure of Staphylococcal nuclease variant Delta+PHS L125A at cryogenic temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-01-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.947, 60.640, 38.177 |
Unit cell angles | 90.00, 92.54, 90.00 |
Refinement procedure
Resolution | 30.920 - 1.650 |
R-factor | 0.193 |
Rwork | 0.188 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3BDC with all H2Os Ca2+ and THP removed and the following truncations: H8A T13A Q30A K64A Q80 T82A M98A Y113A V114A Y115A K116A L125A Q131A K134A K136A; all b-factors were reset to 20 A2. |
RMSD bond length | 0.017 |
RMSD bond angle | 1.633 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.1.4) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.680 |
High resolution limit [Å] | 1.650 | 4.480 | 1.650 |
Rmerge | 0.057 | 0.049 | 0.207 |
Number of reflections | 17169 | ||
<I/σ(I)> | 20.3 | ||
Completeness [%] | 99.4 | 98.2 | 93.9 |
Redundancy | 8.2 | 7.7 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 277 | 29% MPD, 25 mM Potassium Phosphate, Calcium Chloride, pdTp, pH 9.0, vapor diffusion, hanging drop, temperature 277K |