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3NVM

Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMAR scanner 300 mm plate
Spacegroup nameP 31 1 2
Unit cell lengths100.623, 100.623, 265.355
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.431 - 3.408
R-factor0.2455
Rwork0.242
R-free0.31600
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.264
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((phenix.refine: 1.6.1_357))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.00050.000
High resolution limit [Å]3.4003.400
Number of reflections32901
Completeness [%]80.026
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.43030.1 M imidazole pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 303K
1VAPOR DIFFUSION, HANGING DROP6.43030.1 M imidazole pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 303K

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PDB entries from 2024-11-06

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