3NV2
Crystal structure of human galectin-9 C-terminal CRD in complex with N-acetyllactosamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-11-28 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.0 |
Spacegroup name | P 63 |
Unit cell lengths | 70.805, 70.805, 50.209 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.850 - 2.340 |
R-factor | 0.179 |
Rwork | 0.179 |
R-free | 0.23100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3KOE |
RMSD bond length | 0.005 |
RMSD bond angle | 1.500 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.340 | 2.340 |
Rmerge | 0.075 | 0.385 |
Total number of observations | 68565 | |
Number of reflections | 6135 | |
<I/σ(I)> | 8.7 | 7.4 |
Completeness [%] | 100.0 | 100 |
Redundancy | 11.2 | 11.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 20% PEG MME 2000, 0.1M Tris pH 8.5, 0.01M nickel chloride hexahydrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K |