3NPQ
Structure of the S-adenosylhomocysteine riboswitch at 2.18 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-10-02 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 93.793, 103.241, 69.583 |
Unit cell angles | 90.00, 97.90, 90.00 |
Refinement procedure
Resolution | 23.014 - 2.181 |
R-factor | 0.2358 |
Rwork | 0.235 |
R-free | 0.24540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3npn |
RMSD bond length | 0.001 |
RMSD bond angle | 0.536 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Phasing software | PHASER |
Refinement software | PHENIX (1.4_87) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.014 | 23.014 | 2.050 |
High resolution limit [Å] | 1.950 | 6.160 | 1.950 |
Rmerge | 0.052 | 1.005 | |
Rmeas | 0.057 | 1.157 | |
Rpim | 0.022 | 0.566 | |
Total number of observations | 9346 | 13006 | |
Number of reflections | 41336 | ||
<I/σ(I)> | 31.1 | 1.4 | |
Completeness [%] | 86.4 | 93.1 | 47 |
Redundancy | 6.2 | 6.4 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | hanging drop | 7 | 293 | 2.25 mM Spermine, 9 mM magnesium chloride, 0.9 mM spermidine, 2.5 mM Cobalt(III)hexammine chloride, 0.05 M sodium cacodylate pH 7.0, 5% (v/v) PEG 400, hanging drop, temperature 293K |