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3NPQ

Structure of the S-adenosylhomocysteine riboswitch at 2.18 A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]100
Detector technologyCCD
Collection date2009-10-02
DetectorADSC QUANTUM 315
Wavelength(s)0.9795
Spacegroup nameC 1 2 1
Unit cell lengths93.793, 103.241, 69.583
Unit cell angles90.00, 97.90, 90.00
Refinement procedure
Resolution23.014 - 2.181
R-factor0.2358
Rwork0.235
R-free0.24540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3npn
RMSD bond length0.001
RMSD bond angle0.536
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.15)
Phasing softwarePHASER
Refinement softwarePHENIX (1.4_87)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]23.01423.0142.050
High resolution limit [Å]1.9506.1601.950
Rmerge0.0521.005
Rmeas0.0571.157
Rpim0.0220.566
Total number of observations934613006
Number of reflections41336
<I/σ(I)>31.11.4
Completeness [%]86.493.147
Redundancy6.26.44
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1hanging drop72932.25 mM Spermine, 9 mM magnesium chloride, 0.9 mM spermidine, 2.5 mM Cobalt(III)hexammine chloride, 0.05 M sodium cacodylate pH 7.0, 5% (v/v) PEG 400, hanging drop, temperature 293K

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