3NDO
Crystal structure of deoxyribose phosphate aldolase from mycobacterium smegmatis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-05-29 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.980, 73.200, 64.380 |
Unit cell angles | 90.00, 91.00, 90.00 |
Refinement procedure
Resolution | 33.470 - 1.250 |
R-factor | 0.124 |
Rwork | 0.123 |
R-free | 0.14400 |
Structure solution method | MR, MR |
Starting model (for MR) | 1j2w |
RMSD bond length | 0.018 |
RMSD bond angle | 1.773 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.470 | 1.280 |
High resolution limit [Å] | 1.250 | 1.250 |
Rmerge | 0.073 | 0.520 |
Number of reflections | 119986 | |
<I/σ(I)> | 14.19 | 5 |
Completeness [%] | 99.8 | 100 |
Redundancy | 4.3 | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 290 | JCSG SCREEN CONDITION H10: 100MM BIS-TRIS PH 5.5, 25% PEG 3350, 200 MM AMMONIUM ACETATE; PROTEIN AT 4.6 MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K |