3N9G
Crystal structure of the Fab fragment of the human neutralizing anti-West Nile Virus MAb CR4354
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-04-24 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.741, 71.068, 118.597 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.531 - 1.434 |
R-factor | 0.168 |
Rwork | 0.167 |
R-free | 0.18600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | WAM homology model of variable domain + constant domain of PDB ID 3KYK |
RMSD bond length | 0.006 |
RMSD bond angle | 1.128 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.1.4) |
Refinement software | PHENIX (1.5_2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.450 |
High resolution limit [Å] | 1.430 | 1.430 |
Rmerge | 0.072 | 0.542 |
Number of reflections | 78075 | |
<I/σ(I)> | 13.6 | 1.63 |
Completeness [%] | 90.8 | 39.4 |
Redundancy | 6.7 | 2.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | reservoir solution: 20% PEG8000, 10mM MES buffer, pH6.0, 200mM Ca(OAc)2, starting protein concentration in drop: 8 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 293K |