3LZ0
Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 90 |
Detector technology | PIXEL |
Collection date | 2009-12-15 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 107.370, 109.660, 175.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 93.040 - 2.500 |
R-factor | 0.269 |
Rwork | 0.268 |
R-free | 0.31800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | NCP146b (pdb code 1KX4) |
RMSD bond length | 0.009 |
RMSD bond angle | 1.453 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Phasing software | PHASES |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.040 | 107.370 | 2.640 |
High resolution limit [Å] | 2.500 | 7.910 | 2.500 |
Rmerge | 0.065 | 0.384 | |
Total number of observations | 12042 | 13579 | |
Number of reflections | 65509 | ||
<I/σ(I)> | 7.8 | 5.1 | 1.9 |
Completeness [%] | 90.6 | 98.9 | 61.9 |
Redundancy | 4.6 | 4.9 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291 | K cacodylate, KCl, MnCl2, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |