3K6T
Crystal structure of the GLD-1 homodimerization domain from Caenorhabditis elegans at 2.04 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Detector technology | CCD |
Collection date | 2009-05-17 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.889, 42.962, 154.641 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.554 - 2.040 |
R-factor | 0.201 |
Rwork | 0.199 |
R-free | 0.24500 |
Structure solution method | MAD + molecular replacement (native crystal) |
RMSD bond length | 0.005 |
RMSD bond angle | 0.751 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.080 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.048 | 0.342 |
Number of reflections | 15152 | |
<I/σ(I)> | 16.9 | 5.7 |
Completeness [%] | 99.9 | 100 |
Redundancy | 7.4 | 7.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 295 | Sodium phosphate, citrate, LiSO4, isopropanol, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 295 | Sodium phosphate, citrate, LiSO4, isopropanol, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K |