Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3K5C

Human BACE-1 complex with NB-216

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyCCD
Collection date2006-08-25
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.97945
Spacegroup nameP 1 21 1
Unit cell lengths81.752, 103.186, 100.144
Unit cell angles90.00, 104.44, 90.00
Refinement procedure
Resolution70.550 - 2.120
R-factor0.202
Rwork0.200
R-free0.22000
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.005
RMSD bond angle0.900
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareCNX
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.5502.190
High resolution limit [Å]2.1202.120
Rmerge0.0480.377
Number of reflections910818430
<I/σ(I)>15.23.8
Completeness [%]99.799.9
Redundancy3.83.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION5.5292CRYSTALS WERE GROWN AT 19C BY VAPOUR DIFFUSION IN HANGING DROPS FROM 1.0M AMMONIUM SULFATE IN WATER. PROTEIN STOCK WAS BACE1 7.0MG/ML IN 10MM TRIS-HCL PH 7.4, 25MM NACL, WITH A 6-FOLD EXCESS OF NB-216 ADDED FROM A 50MM STOCK SOLUTION IN 90% DMSO-D6 (1.7% DMSO IN DROP). A SOLUTION CONTAINING 1.2M AMMONIUM SULFATE, 25% (V/V) GLYCEROL, 1.0MM NB-216 WAS USED AS CRYO-PROTECTANT., VAPOR DIFFUSION, temperature 292K

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon