3ITP
Crystal structure of Staphylococcal nuclease variant Delta+PHS F34K at cryogenic temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-08-20 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97950 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 31.027, 60.296, 38.249 |
Unit cell angles | 90.00, 92.26, 90.00 |
Refinement procedure
Resolution | 32.280 - 1.750 |
R-factor | 0.204 |
Rwork | 0.203 |
R-free | 0.23500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ID 3BDC residue 34 truncated to ALA all water molecules and ligands were removed All b-factors set to 20A^2 all alternate residue conformations deleted defaulting to conformation A |
RMSD bond length | 0.026 |
RMSD bond angle | 1.215 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.1.3) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.580 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.046 | 0.323 |
Number of reflections | 19271 | |
<I/σ(I)> | 26.9 | |
Completeness [%] | 93.9 | 60.1 |
Redundancy | 7.3 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 277 | 29%(w/v) MPD, 25 mM Potassium Phosphate, Calcium Chloride (3 M eq), pdTp (2 M eq), 5.5 (mg protein)/mL in stock solution; 4uL protein stock and 4uL well solution per drop; 1-2 weeks of growth, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |