Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3IHO

The C-terminal glycosylase domain of human MBD4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Spacegroup nameH 3
Unit cell lengths83.541, 83.541, 73.956
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution51.710 - 2.700
R-factor0.18735
Rwork0.182
R-free0.29003
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.021
RMSD bond angle1.978
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]51.71040.0002.800
High resolution limit [Å]2.6975.8102.697
Rmerge0.0900.0390.315
Number of reflections5287
<I/σ(I)>6.3
Completeness [%]93.799.964.3
Redundancy3.74.22.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.525% PEG3350, 0.2M Li Sulfate, 0.1M Hepes pH 7.5, VAPOR DIFFUSION, SITTING DROP

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon