3I02
Crystal structure of S54-10 antibody in complex with antigen Kdo(2.4)Kdo(2.4)Kdo
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002+ |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2007-12-14 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.980, 53.360, 142.230 |
Unit cell angles | 90.00, 102.13, 90.00 |
Refinement procedure
Resolution | 19.990 - 2.600 |
R-factor | 0.2144 |
Rwork | 0.211 |
R-free | 0.26830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1Q9T |
RMSD bond length | 0.004 |
RMSD bond angle | 1.026 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.4SSI) |
Phasing software | PHASER (1.3.2) |
Refinement software | PHENIX (1.4_4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.990 | 19.990 | 2.690 |
High resolution limit [Å] | 2.600 | 5.570 | 2.600 |
Rmerge | 0.097 | 0.067 | 0.325 |
Number of reflections | 28890 | ||
<I/σ(I)> | 12.9 | 3.2 | |
Completeness [%] | 97.3 | 99 | 95.8 |
Redundancy | 3.69 | 3.8 | 3.81 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |