3HZV
Crystal structure of S73-2 antibody in complex with antigen Kdo(2.8)Kdo(2.4)Kdo
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002+ |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-06-08 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.050, 80.800, 128.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.989 - 1.900 |
R-factor | 0.214 |
Rwork | 0.212 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1Q9R |
RMSD bond length | 0.004 |
RMSD bond angle | 0.942 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.1SSI) |
Phasing software | PHASER (2.1.1) |
Refinement software | PHENIX (1.4_4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.990 | 19.990 | 1.970 |
High resolution limit [Å] | 1.900 | 4.080 | 1.900 |
Rmerge | 0.072 | 0.037 | 0.353 |
Total number of observations | 19106 | 17011 | |
Number of reflections | 38610 | ||
<I/σ(I)> | 29.7 | 3.8 | |
Completeness [%] | 97.8 | 92.5 | 99.4 |
Redundancy | 4.68 | 4.84 | 4.37 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | PEG 4000, Ethylene glycol, ZnCl2, MgCl2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |