3H7C
Crystal Structure of Arabidopsis thaliana Agmatine Deiminase from Cell Free Expression
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 23-ID-D |
| Synchrotron site | APS |
| Beamline | 23-ID-D |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2009-04-06 |
| Detector | MARMOSAIC 300 mm CCD |
| Wavelength(s) | 0.96350,0.97943,0.97957 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 123.715, 69.932, 50.917 |
| Unit cell angles | 90.00, 98.40, 90.00 |
Refinement procedure
| Resolution | 50.000 - 1.500 |
| R-factor | 0.147 |
| Rwork | 0.146 |
| R-free | 0.17400 |
| Structure solution method | MAD |
| RMSD bond length | 0.017 |
| RMSD bond angle | 1.630 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | RESOLVE |
| Refinement software | REFMAC (5.5.0066) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 1.530 |
| High resolution limit [Å] | 1.500 | 1.500 |
| Rmerge | 0.098 | 0.444 |
| Number of reflections | 68398 | |
| <I/σ(I)> | 19.6 | 4.1 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 7.5 | 6.7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | Protein solution- 10 mg/ml agmatine deiminase, 50 mM NaCl, 0.3 mM TCEP, 5 mM HEPES, pH 7.0; Precipitant solution- 34% Polyethylene glycol 2000, 200 mM KBr, 100 mM triethanolamine, pH 7.5; Cryoprotectant- MiTeGen LV Cryo Oil, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
