Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3GYK

The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3

Experimental procedure
Experimental methodSAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2009-03-25
DetectorSBC-3
Wavelength(s)0.97953
Spacegroup nameP 1 21 1
Unit cell lengths67.836, 91.700, 67.911
Unit cell angles90.00, 120.00, 90.00
Refinement procedure
Resolution50.000 - 1.760
R-factor0.16194
Rwork0.160
R-free0.19753
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle1.344
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareSHELXD
Refinement softwareREFMAC (5.5.0054)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.790
High resolution limit [Å]1.7601.760
Rmerge0.0750.345
Number of reflections71433
<I/σ(I)>354.3
Completeness [%]99.999.9
Redundancy3.73.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP72910.2M Lithium sulfate, 0.1M Tris-HCl, 2.0M Ammonium sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon