3GTE
Crystal Structure of Dicamba Monooxygenase with Non-heme Iron
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-06-29 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 32 |
Unit cell lengths | 81.110, 81.110, 158.810 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 1.950 |
Rwork | 0.235 |
R-free | 0.26170 |
Structure solution method | MR WAS PERFORMED USING A PRELIMINARY DMO STRUCTURE. THIS EARLY DMO STRUCTURE WAS OBTAINED LARGELY USING A HIGH-REDUNDANCY, 1.5418 A WAVELENGTH DATA SET FOR FE SINGLE ANOMALOUS DISPERSION (SAD) PHASING, WITH ASSISTANCE FROM THE SULFUR ANOMALOUS SIGNAL IN A HIGH-REDUNDANCY, 2.29 A WAVELENGTH DATA SET. |
RMSD bond length | 0.005 |
RMSD bond angle | 1.300 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | CNX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.120 | 2.020 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.067 | 0.467 |
Number of reflections | 81407 | |
<I/σ(I)> | 31.4 | 2.64 |
Completeness [%] | 96.3 | 92 |
Redundancy | 6.7 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 294 | The purified protein was concentrated to 10-20 mg/ml and buffer exchanged into 25 mM Tris-HCl, pH 8.0, 30-50 mM NaCl, 25 mM sodium citrate. DMO crystals were grown using the vapor diffusion by sitting drop method, with a reservoir solution of 8-11% PEG 6000, 100 mM sodium acetate buffer pH 5.5, 1 M LiCl, and 4 uL droplets of varying protein-to-precipitant ratios., VAPOR DIFFUSION, SITTING DROP, temperature 294K |