3GR4
Activator-Bound Structure of Human Pyruvate Kinase M2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-01-22 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97934 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.275, 153.206, 93.138 |
Unit cell angles | 90.00, 102.91, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.600 |
R-factor | 0.208 |
Rwork | 0.208 |
R-free | 0.23100 |
Starting model (for MR) | isomorphous replacement with pdb entry 3GQY |
RMSD bond length | 0.015 |
RMSD bond angle | 1.348 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.5.0088) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.660 |
High resolution limit [Å] | 1.600 | 3.450 | 1.600 |
Rmerge | 0.059 | 0.026 | 0.707 |
Number of reflections | 283418 | ||
<I/σ(I)> | 10.2 | ||
Completeness [%] | 96.3 | 99.5 | 75.2 |
Redundancy | 3.6 | 3.8 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291 | 20% PEG3350, 0.2M diammonium tartrate, 0.005M activator, 0.005M ADP, vapor diffusion, temperature 291K |