3GMP
Structure of mouse CD1d in complex with PBS-25
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-04-14 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.710, 97.730, 55.490 |
Unit cell angles | 90.00, 106.52, 90.00 |
Refinement procedure
Resolution | 27.780 - 1.700 |
R-factor | 0.17784 |
Rwork | 0.176 |
R-free | 0.21569 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gml |
RMSD bond length | 0.022 |
RMSD bond angle | 2.099 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0066) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.800 |
High resolution limit [Å] | 1.700 | 1.700 |
Number of reflections | 46664 | |
<I/σ(I)> | 23.3 | 4 |
Completeness [%] | 99.5 | 98.8 |
Redundancy | 4.1 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 295 | 0.2 M Malonate pH 4.5, 20%(v/v) PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K |