Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3GMF

Crystal structure of protein-disulfide isomerase from Novosphingobium aromaticivorans

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]90
Detector technologyCCD
Collection date2009-03-12
DetectorADSC QUANTUM 315
Wavelength(s)0.9793
Spacegroup nameH 3
Unit cell lengths101.526, 101.526, 58.413
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.770 - 1.760
R-factor0.18595
Rwork0.185
R-free0.22908
Structure solution methodSAD
RMSD bond length0.011
RMSD bond angle1.321
Data reduction softwareDENZO
Data scaling softwareHKL-2000
Phasing softwareSHELXD
Refinement softwareREFMAC (5.3.0034)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.7701.820
High resolution limit [Å]1.7601.760
Rmerge0.370
Number of reflections22299
<I/σ(I)>12.52
Completeness [%]98.799.5
Redundancy3.13.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.52940.1M Sodium acetate pH 4.5, 3M Sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 294K

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon