3GIO
Crystal structure of the TNF-alpha inducing protein (Tip alpha) from Helicobacter pylori
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-21 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97912, 0.97885, 0.96000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.519, 67.114, 91.263 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.400 |
Rwork | 0.233 |
R-free | 0.24100 |
Structure solution method | MAD |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SOLVE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.093 | 0.422 |
Number of reflections | 13650 | |
<I/σ(I)> | 42.9 | 7.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 15.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 295 | 100mM Tris-HCl (pH 7.0), 200mM calcium acetate, 20% (w/v) PEG 3000, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 295 | 100mM Tris-HCl (pH 7.0), 200mM calcium acetate, 20% (w/v) PEG 3000, VAPOR DIFFUSION, HANGING DROP, temperature 295K |