3FVB
Crystal structure of ferritin (bacterioferritin) from Brucella melitensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-05 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.03322 |
Spacegroup name | F 2 3 |
Unit cell lengths | 174.810, 174.810, 174.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.806 |
R-factor | 0.183 |
Rwork | 0.181 |
R-free | 0.21500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jgc molecule A |
RMSD bond length | 0.013 |
RMSD bond angle | 1.219 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (refmac_5.5.0053) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 3.880 | 1.800 |
Rmerge | 0.081 | 0.039 | 0.843 |
Number of reflections | 40564 | ||
<I/σ(I)> | 26.769 | ||
Completeness [%] | 100.0 | 99.9 | 99.8 |
Redundancy | 9.2 | 11.1 | 8.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 12.4 mg/mL protein, 30% PEG 400, 0.2 M MGCl2, 0.1 M HEPES pH 7.5, 0.1 M imidazole; Crystal ID 200992h8. Original crystal hit was in JCSG+ D2, which was optimized using the Emerald Biosystems ADDit Additive Screen. , VAPOR DIFFUSION, SITTING DROP, temperature 289K |