Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3FD3

Structure of the C-terminal domains of a LysR family protein from Agrobacterium tumefaciens str. C58.

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2008-08-07
DetectorADSC QUANTUM 315
Wavelength(s)0.97935,0.97948
Spacegroup nameP 43 21 2
Unit cell lengths53.613, 53.613, 188.027
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.160 - 1.700
R-factor0.171
Rwork0.169
R-free0.20000
Structure solution methodMAD
RMSD bond length0.014
RMSD bond angle1.381
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMLPHARE
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.730
High resolution limit [Å]1.7004.6101.700
Rmerge0.0740.0540.405
Number of reflections30842
<I/σ(I)>51
Completeness [%]98.399.678.4
Redundancy14.813.910.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION5.62950.1M sodium citrate pH5.6, 0.1M ammonium acetate, 15% PEG 4000, 1/800 (w/w) endoproteinase Glu-C V8, VAPOR DIFFUSION, temperature 295K

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon