3F1K
Crystal Structure of yciK from E. coli, an oxidoreductase, complexed with NADP+ at 2.6A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-11-01 |
Detector | MAR CCD 300 mm |
Wavelength(s) | 0.97887, 0.97864, 0.96860 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 88.509, 88.509, 80.419 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.608 - 2.600 |
R-factor | 0.216 |
Rwork | 0.211 |
R-free | 0.26100 |
Structure solution method | MAD, SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.416 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.250 | 44.250 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.114 | 0.096 | 0.424 |
Total number of observations | 28232 | 27480 | |
Number of reflections | 12975 | ||
<I/σ(I)> | 16.6 | 28.5 | 6.3 |
Completeness [%] | 99.9 | 99.4 | 100 |
Redundancy | 21.76 | 19.49 | 21.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 295 | 0.1M Sodium Acetate monohydrate pH 4.6, 8% w/v polyethylene glycol 4000, vapor diffusion, hanging drop, temperature 295K |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 295 | 0.1M Sodium Acetate monohydrate pH 4.6, 8% w/v polyethylene glycol 4000, vapor diffusion, hanging drop, temperature 295K |